Software
General Molecular Biology | General | DNA Sequencing | Genotyping | Mass Spec and Proteomics | Microarray | Imaging | Other Software Sources
Note on Commercial Software: Some of the commercial software listed on this page is available by subscription only. For subscription software, please inquire to establish an Information Technology Services account. This is unique to a lab and not related to our online ordering and billing system. You must notify us when you add a keyserver client.
Some commercial software is available at no additional charge to facility customers. The software may be available for use in your lab or else it may eb available only on workstations within our facility.
Other software is available for free or directly from a vendor. Information on these software packages is provided only for you convenience. We do not provide direct support for free software or packages purchased directly from a vendor.
Subscription Information for Commercial Software from the Information Technology Services
Pricing Information for Commercial Software from the Information Technology Services
General Molecular Biology
| Name | Publisher | Platforms | Type | Description | Info/Download |
|---|---|---|---|---|---|
| LaserGene | DNASTAR | Mac OS, Windows | Commercial - Information Technology Services | Comprehensive Software for Molecular Biology | Contact Us |
| Gene Construction Kit 2 | Textco, Inc. | Mac OS, Windows | Commercial - Information Technology Services | cloning management and display application | Contact Us |
| PAUP* | Sinauer Associates, Inc. | Mac OS, Windows, Linux/Unix | Commercial - Information Technology Services | Phylogenetic Analysis Using Parsimony (*and other methods) | Contact Us |
| MacClade | Sinauer Associates, Inc. | Mac OS | Commercial - Information Technology Services | phylogentic analysis | Contact Us |
| Ingenuity Pathways Analysis | Ingenuity | Windows | Commercial - CGC | Pathway Analysis | Available through the Weill Cornell Computational Genomics Core |
General Software
| Name | Publisher | Platforms | Type | Description | Info/Download |
|---|---|---|---|---|---|
| Keyserver Client | Sassafras Software | Mac OS, Windows | Commercial - Information Technology Services | Required to run other commercial software | Contact Us |
| Photoshop | Adobe Systems Inc. | Mac OS, Windows | Commercial - Information Technology Services | image/bitmap manipulation | Contact Us |
| Illustrator | Adobe Systems Inc. | Mac OS, Windows | Commercial - Information Technology Services | image/vector graphics manipulation | Contact Us |
DNA Sequencing Software
| Name | Publisher | Platforms | Type | Description | Info/Download |
|---|---|---|---|---|---|
| Sequencher | Gene Codes Corporation | Mac OS, Windows | Commercial - Information Technology Services | DNA sequence analysis | Contact Us |
| CodonCode Aligner | CodonCode Corporation | Mac OS, Windows | Commercial - Information Technology Services | DNA sequence analysis | Contact Us |
| FinchTV | Geospiza | Mac OS, Windows, Linux/Unix | Free | View, edit, print and export sequence data. Highly Recommended! | Info/Download |
| Sequence Scanner | Applied Biosystems | Windows | Free | View, edit, print and export sequence data | Info/Download |
| 4Peaks | mekentosj | Mac OS | Free | View, edit, print and export sequence data | Info/Download |
| Chromas | Technelysium | Windows | Free | View, edit, print and export sequence data | Info/Download |
Genotyping/SNP Software
| Name | Publisher | Platforms | Type | Description | Info/Download |
|---|---|---|---|---|---|
| GeneMapper | Applied Biosystems | Commercial | Remote Access from Mac OS, Windows, Linux | Fragment Analysis and SNPPlex Analysis | Access Information |
| PeakScanner | Applied Biosystems | Commercial | Free Download and Remote Access from Mac OS, Windows, Linux | Peak Scanner software separates DNA fragments by size, provides a profile of the separation, and precisely calculates each fragment size. The software allows you to view, edit, analyze, print, and export fragment analysis data generated on all Applied Biosystems genetic analyzer | Download or Access Information |
| BeadStudio | Illumina | Commercial | Remote Access from Mac OS, Windows, Linux | BeadStudio Software is a modular analysis tool for genotyping and gene expression applications. BeadStudio was designed from the ground up to be easy to integrate with other downstream applications. | Access Information |
Mass Spectrometry and Proteomics Software
| Name | Publisher | Platforms | Type | Description | Download |
|---|---|---|---|---|---|
| Analyst | Applied Biosystems | Remote Access from Mac OS, Windows, Linux | Commercial | Mass Spectrometry Analysis | Access Information |
| SPCTools / IPP (Integrated Proteomics Pipeline) / TPP (Trans-Proteomic Pipeline) | Seattle Proteome Center at the Institute for Systems Biology and insilicos | Windows, Linux/Unix | Free | Collection of tools for preoteomic Data Analysis | Info/Download |
| Insilicos Viewer | insilicos | Windows | Free | Collection of tools for preoteomic Data Analysis | Info/Download |
| MoverZ | Genomic Solutions | Windows | Free | program for viewing and manipulating biopolymer mass spectra | Info/download |
Microarray Software
| Name | Publisher | Platforms | Type | Description | Download |
|---|---|---|---|---|---|
| GeneTraffic | Iobion | Windows | Commercial | Microarray Data Management and Analysis | Contact Us |
| GeneSpring and SigNet | Silicon Genetics/Agilent | Windows | Commercial - CGC | Microarray Data Analysis | Available through the Weill Cornell Computational Genomics Core |
| R / Bioconductor | R-Project | Mac OS, Windows, Linux/Unix | Free | Statistical Analysys. Bioconductor deals with Microarray and other genomic data. | R-Project - Bioconductor |
Imaging Software
| Name | Publisher | Platforms | Type | Description | Download |
|---|---|---|---|---|---|
| Metamorph | Molecular Devices | Windows | Commercial | Image Processing and Analysis | Contact Us / information |
| Volocity | Improvision | Mac OS, Windows | Commercial | Image Processing and Analysis | Contact Us / information |
| ImageJ | National Institutes of Health | Mac OS, Windows, Linux/Unix | Free | Image Processing and Analysis | info/download |
Other Sources of Software: